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Table 2 Comparison of claudin expression data in brain endothelial cells or capillaries derived from the present work (hCMEC/D3), from Berndt et al. [3] (laser-microdissected human brain capillaries), the Barres1 (isolated brain endothelial cells) and the Betsholtz data base2 (single cell sequences brain capillary endothelial cells—capEC)

From: The pivotal role of micro-environmental cells in a human blood–brain barrier in vitro model of cerebral ischemia: functional and transcriptomic analysis

Species

Current work qPCR3

Rank

Berndt et al. [3]

qPCR4

Rank

Barres data base (FPKM)

Rank

Betsholtz data base (counts)

Rank

Human

Human

Mouse

Mouse

Cldn1

1000

2

30

4

0.2

7

nd

Cldn2

nd

1.26

15

0.1

11

3

4

Cldn3

5.2

20

6.08

9

0.3

5

0.05

9

Cldn4

18

16

4.43

11

0.1

11

nd

Cldn5

39

9

205

1

< 3500

1

1500

1

Cldn6

18

15

7.51

7

2

3

0.1

7

Cldn7

219

5

nd

0.12

9

nd

Cldn8

18

14

nd

0.1

11

nd

Cldn9

25

12

13.4

5

0.15

8

nd

Cldn10

142, 116

6a

nd

nd

nd

Cldn11

3189

1

162

2

nd

nd

Cldn12

281, 18, 291

3, 4, 13b

114

3

5

2

20

3

Cldn13

#

#

0.1

11

nd

Cldn14

69

7

nd

nd

nd

Cldn15

17

17

6.13

8

0.4

4

nd

Cldn16

8

19

nd

0.1

11

0.02

10

Cldn17

30

10

5.85

10

0.1

11

nd

Cldn18

27, 3.71

11, 22c

nd

0.1

11

0.1

7

Cldn19

nd

nd

0.1

11

< 0.1

11

Cldn20

52

8

3.35

13

0.1

11

0.4

5

Cldn21

nd

nd

##

##

Cldn22

9.97

18

3.95

12

0.3

5

0.2

6

Cldn23

0.25

24

1.59

14

0.1

11

nd

Cldn24

3.65

23

nd

0.12

9

na

Cldn25

4.77

21

nd

na

30

2

  1. nd = not detected; CLDN21 = CLDN22 at human; na = not available; #: not encoded in human; ##: not encoded in mouse; adata listed are for Cldn10 tva and tvb; bdata listed are for Cldn12 tv1, tv2, tv3; cdata listed are for Cldn18 tv1b and tv2a.; 1Zhang et al. [54], accessed on 21st of January 2020: https://web.stanford.edu/group/barres_lab/brain_rnaseq.html; 2Vanlandewijck et al. [46], He et al. [16], accessed on 21st of January 2020: http://betsholtzlab.org/VascularSingleCells/database.html; 3mean values related to Cldn1, which was set to 1000; 4mean values * 10−4 from the supplementary file of Berndt et al. [3]